How to resuspend primers and oligos to 100 µM
Primers and oligos usually arrive dried in a tube, with the amount printed on the label in nanomoles. Resuspending them to a round concentration, almost always 100 µM, makes every later dilution simple.
The calculation
1 µM is 1 pmol per µL. So for a stock concentration in µM:
volume (µL) = nmol on the tube ÷ desired µM × 1000
For a 100 µM stock, this simplifies to nmol × 10 µL.
| Amount on tube | For 100 µM, add |
|---|---|
| 10.0 nmol | 100 µL |
| 25.3 nmol | 253 µL |
| 38.7 nmol | 387 µL |
Step by step
- Spin the tube briefly before opening. The dried oligo may be on the lid or walls.
- Add the calculated volume of nuclease-free water or low-EDTA TE buffer (10 mM Tris, 0.1 mM EDTA, pH 8).
- Vortex briefly, let it sit for a few minutes at room temperature, vortex again and spin down.
- Label the tube with the name, concentration and date.
Make a working stock
Most PCR recipes call for a 10 µM primer working stock. Dilute the stock 1:10, for example 10 µL of 100 µM stock + 90 µL water. Use the working stock day to day and keep the concentrated stock in the freezer, so it goes through fewer freeze–thaw cycles and is less exposed to contamination.
Water or TE?
TE keeps the pH slightly alkaline and protects DNA from nucleases, so it is better for long-term storage. Water is fine for working stocks. Avoid regular TE (1 mM EDTA) for oligos you will use in reactions sensitive to Mg²⁺ chelation; low-EDTA TE avoids that problem.
Storage
- Stocks: −20 °C, stable for a year or more.
- Working stocks: −20 °C, or 4 °C for a few weeks of frequent use.
- Fluorescently labelled probes: protect from light and aliquot to limit freeze–thaw cycles.
Frequently asked questions
Why 100 µM?
It is concentrated enough for long-term storage and divides cleanly into a 10 µM working stock with a simple 1:10 dilution.
The label gives µg instead of nmol. What do I do?
Divide the mass by the oligo's molecular weight to get moles: nmol = µg ÷ MW (g/mol) × 1000. The molecular weight is on the oligo's specification sheet.
Can I resuspend directly to 10 µM?
You can, but it gives a large volume of dilute primer that degrades faster. Making a 100 µM stock and a separate working stock is the usual practice.